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PROGRAM = bam2wig
SOURCES = $(PROGRAM)
OBJECTS = $(SOURCES:.c=.o)
TOOLDIR=/home/mario/tools
SAMTOOLS=$(TOOLDIR)/samtools/
HTSLIB=$(TOOLDIR)/htslib/
BCFTOOLS=$(TOOLDIR)/bcftools-1.2/
TABIX=$(TOOLDIR)/tabix/
INCLUDES=-I$(SAMTOOLS) -I. -I$(HTSLIB) -I$(BCFTOOLS) -I$(TABIX)
VPATH=$(SAMTOOLS)
LIBS=$(SAMTOOLS)/libbam.a $(HTSLIB)/libhts.a -lcurses -lm -lz -lpthread
CFLAGS=-Wall -O2 $(INCLUDES)
CC=gcc
$(PROGRAM) : bam2wig.o
$(CC) $(CFLAGS) $^ -o $@ $(LIBS)
bam2wig.o : bam2wig.c
$(CC) $(CFLAGS) -c $^ -o $@ $(INCLUDES)
clean:
rm -f $(OBJECTS) bam2wig.o
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