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Source: velvet
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Testsuite: autopkgtest
Priority: optional
Build-Depends: debhelper (>= 9),
zlib1g-dev,
texlive-latex-base,
texlive-latex-recommended
Standards-Version: 3.9.6
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/velvet.git
Vcs-Git: git://anonscm.debian.org/debian-med/velvet.git
Homepage: http://www.ebi.ac.uk/~zerbino/velvet/
Package: velvet
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Suggests: velvet-example
Description: Nucleic acid sequence assembler for very short reads
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
Cambridge, in the United Kingdom.
.
Velvet currently takes in short read sequences, removes errors then produces
high quality unique contigs. It then uses paired read information, if
available, to retrieve the repeated areas between contigs.
Package: velvet-long
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
velvet
Description: Nucleic acid sequence assembler for very short reads, long version
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
Cambridge, in the United Kingdom.
.
Velvet currently takes in short read sequences, removes errors then produces
high quality unique contigs. It then uses paired read information, if
available, to retrieve the repeated areas between contigs.
.
This package installs special long-mode versions of Velvet, as recommended
in the Velvet tutorials.
Package: velvet-example
Architecture: all
Depends: ${misc:Depends}
Recommends: python
Description: Example data for the Velvet sequence assembler
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
Cambridge, in the United Kingdom.
.
Velvet currently takes in short read sequences, removes errors then produces
high quality unique contigs. It then uses paired read information, if
available, to retrieve the repeated areas between contigs.
.
This package contains the example data distributed in the sources of Velvet,
a de novo genomic assembler.
Package: velvet-tests
Architecture: all
Depends: ${misc:Depends}
Recommends: python
Description: Test data for the Velvet sequence assembler
Velvet is a de novo genomic assembler specially designed for short read
sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
Cambridge, in the United Kingdom.
.
Velvet currently takes in short read sequences, removes errors then produces
high quality unique contigs. It then uses paired read information, if
available, to retrieve the repeated areas between contigs.
.
This package contains the test data to run the unit tests of Velvet, a de novo
genomic assembler, that could be used as additional set of examples.
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