1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150
|
tm-align (20160521+dfsg-2) unstable; urgency=medium
* Team upload.
* fix typo in package's description in d/control
* add example gzipped protein structures+mention them in d/source/binaries
* add testsuite
* add README.test for testsuite
* add example files to d/copyright, add tm-align.examples file
-- Tatiana Malygina <merlettaia@gmail.com> Fri, 10 Jun 2016 22:12:31 +0000
tm-align (20160521+dfsg-1) unstable; urgency=medium
* New upstream version
* Moved packaging from SVN to Git
* Use xz compression in watch file
* cme fix dpkg-control
* Better hardening
-- Andreas Tille <tille@debian.org> Mon, 30 May 2016 09:35:45 +0200
tm-align (20150914+dfsg-1) unstable; urgency=medium
* New homepage
* New upstream version
* cme fix dpkg-control
* dversionmangle in d/watch
-- Andreas Tille <tille@debian.org> Wed, 23 Sep 2015 10:01:59 +0200
tm-align (20140601+dfsg-1) unstable; urgency=medium
* New upstream version
* Use Files-Excluded consequently (in rules:get-orig-source, drop
d/get-orig-source, adapt d/watch from dversionmangle to uversionmangle)
-- Andreas Tille <tille@debian.org> Thu, 07 Aug 2014 16:21:35 +0200
tm-align (20130511+dfsg-2) unstable; urgency=medium
* Fix Vcs location
* move debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Thu, 13 Feb 2014 17:03:43 +0100
tm-align (20130511+dfsg-1) unstable; urgency=low
* New upstream version
* debian/copyright:
- Add Files-Excluded to document what was removed from original source
* debian/watch: enable handling of +dfsg suffix
* debian/get-orig-source: use new uscan of available
* debian/upstream: more detailed information
* debian/control:
- cme fix dpkg-control
- use anonscm in Vcs fields
-- Andreas Tille <tille@debian.org> Fri, 02 Aug 2013 14:55:58 +0200
tm-align (20120507-1) unstable; urgency=low
* New upstream version
* debian/rules: Add hardening options
-- Andreas Tille <tille@debian.org> Fri, 29 Jun 2012 18:30:36 +0200
tm-align (20120124-1) unstable; urgency=low
[ Charles Plessy ]
* debian/upstream: renamed from upstream-metadata.yaml
[ Andreas Tille ]
* New upstream version
* debian/upstream:
- Fixed typo (s/TITILE/TITLE/)
- Moved DOI+PMID to references
* debian/control: Standards-Version: 3.9.3 (no changes needed)
* debhelper 9 (control+compat)
* debian/changelog: DEP5 verified using
cme fix dpkg-copyright
-- Andreas Tille <tille@debian.org> Thu, 08 Mar 2012 15:35:07 +0100
tm-align (20111012-1) unstable; urgency=low
* New upstream release
* Enhances t-coffee
* Standards-Version: 3.9.2 (no changes needed)
* Debhelper 8 (control + compat)
* Fixed Vcs fields
-- Andreas Tille <tille@debian.org> Fri, 21 Oct 2011 10:00:04 +0200
tm-align (20110130-2) unstable; urgency=low
* New upstream version (Closes: #447505)
- 2011/01/30: An open source license is attached to the program
* Reverting changelog to keep the history.
-- Steffen Moeller <moeller@debian.org> Sat, 05 Feb 2011 12:43:32 +0100
tm-align (20110130-1) UNRELEASED; urgency=low
* Initial release.
-- Andreas Tille <tille@debian.org> Sun, 30 Jan 2011 22:49:21 +0100
tm-align (20110124-1) UNRELEASED; urgency=low
* New upstream version
- 2005/06/01: A small bug of two-point superposition was fixed.
- 2005/10/19: the program was reformed so that the alignment results
are not dependent on the specific compilers.
- 2006/06/20: select 'A' if there is altLoc when reading PDB file.
- 2007/02/27: rotation matrix from Chain-1 to Chain-2 was added.
- 2007/04/18: added options with TM-score normalized by average
length, shorter length, or longer length of two
structures.
- 2007/05/23: added additional output file 'TM.sup_all' for showing
all atoms while 'TM.sup' is only for aligned atoms
- 2007/09/19: added a new feature alignment to deal with the problem
of aligning fractional structures (e.g. protein
interfaces).
- 2007/10/16: A bug for irregular bond-length models was fixed.
- 2009/03/14: A new initial alignment was added and previous initial
alignments are further enhanced. This change increased
accuracy by 4% but increases CPU cost by 40%.
- 2009/08/20: A bug for asymmetry alignment result was fixed.
- 2010/08/02: A new RMSD matrix was used to remove obsolete
statements. Staled subroutines were deleted.
- 2011/01/03: The length of pdb file names were extended to 500
- 2011/01/24: Fixed a bug on output file name created on 2011/01/03
* Tweaked get-orig-source in rules to spot version in upstream file
* New standards version 3.9.4
-- Tim Booth <tbooth@ceh.ac.uk> Sun, 30 Jan 2011 13:34:53 +0000
tm-align (20050601-2) UNRELEASED; urgency=low
* Updated to Standards-Version 3.7.3 (no changes needed)
-- David Paleino <d.paleino@gmail.com> Wed, 06 Feb 2008 13:11:58 +0100
tm-align (20050601-1) UNRELEASED; urgency=low
* Initial packaging.
-- Steffen Moeller <moeller@debian.org> Sun, 21 Oct 2007 17:11:53 +0200
|