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#!/usr/bin/make -f
# debian/rules file for ssake
# (C) Andreas Tille
# GPL
pkg := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
examples=$(pkg)-examples
%:
dh $@
BINDIR := $(CURDIR)/debian/$(pkg)/usr/bin
DOCDIR := $(CURDIR)/debian/$(examples)/usr/share/doc/$(pkg)
override_dh_install:
dh_install
cp -a SSAKE $(BINDIR)/ssake
cp -a tools/TQS.py $(BINDIR)/tqs
override_dh_installexamples:
dh_installexamples
for sh in $(DOCDIR)/examples/*.sh ; do \
sed -i '1 i #!/bin/sh' $${sh} ; \
done
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
TESTDIR := $(shell mktemp -d)
override_dh_auto_test:
cp -a test/* $(TESTDIR)
cd $(TESTDIR) && $(CURDIR)/SSAKE -f Herpesvirus_3.60kb.reads.fa -m 16 -o 2 -r 0.6 -p 0 -t 0 -c 1 -w 5 -b myFirstSSAKErun
rm -rf $(TESTDIR)
endif
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