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Source: samtools
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>,
Dominique Belhachemi <domibel@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
bash-completion,
# libio-pty-perl is needed by the regression test.
libio-pty-perl,
libncurses5-dev,
libhts-dev (>= 1.3.1),
zlib1g-dev,
automake,
autoconf-archive,
pkg-config,
tabix (>= 1.0)
# tabix is needed for the regression tests.
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/samtools.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/samtools.git
Homepage: http://www.htslib.org/
Package: samtools
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Recommends: python
Description: processing sequence alignments in SAM and BAM formats
Samtools is a set of utilities that manipulate nucleotide sequence alignments
in the binary BAM format. It imports from and exports to the ascii SAM
(Sequence Alignment/Map) format, does sorting, merging and indexing, and allows
one to retrieve reads in any regions swiftly. It is designed to work on a
stream, and is able to open a BAM (not SAM) file on a remote FTP or HTTP
server.
Package: samtools-test
Architecture: all
Depends: ${misc:Depends}
Recommends: libio-pty-perl
Description: test files for the samtools package
Samtools is a set of utilities that manipulate nucleotide sequence alignments
in the binary BAM format.
.
This package contains test files for the samtools package.
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