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Source: poa
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9)
Standards-Version: 3.9.6
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/poa/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/poa/trunk/
Homepage: http://poamsa.sourceforge.net/
Package: poa
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Suggests: blast2
Enhances: t-coffee
Description: Partial Order Alignment for multiple sequence alignment
POA is Partial Order Alignment, a fast program for multiple sequence
alignment (MSA) in bioinformatics. Its advantages are speed,
scalability, sensitivity, and the superior ability to handle branching
/ indels in the alignment. Partial order alignment is an approach to
MSA, which can be combined with existing methods such as progressive
alignment. POA optimally aligns a pair of MSAs and which therefore can
be applied directly to progressive alignment methods such as CLUSTAL.
For large alignments, Progressive POA is 10-30 times faster than
CLUSTALW.
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