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Source: pbalign
Section: python
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif@debian.org>
Build-Depends:
debhelper (>= 9),
dh-python,
python-all,
python-setuptools,
python-pbcore (>= 0.8.5),
python-pbcommand (>= 0.2.0),
python-sphinx,
help2man,
Standards-Version: 3.9.8
Homepage: https://github.com/PacificBiosciences/pbalign
Vcs-Git: https://anonscm.debian.org/git/debian-med/pbalign.git
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/pbalign.git
Package: pbalign
Architecture: all
Depends:
${misc:Depends},
${python:Depends},
python-pbalign,
python-pkg-resources,
blasr (>= 5.3+0),
Recommends:
python-pbh5tools,
hdf5-tools,
Suggests:
bowtie2,
gmap,
pbalign-doc,
Description: map Pacific Biosciences reads to reference DNA sequences
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
format.
.
This package is part of the SMRTAnalysis suite.
Package: python-pbalign
Architecture: all
Depends:
${misc:Depends},
${python:Depends},
blasr (>= 5.3+0),
Recommends:
python-pbh5tools,
hdf5-tools,
Suggests:
bowtie2,
gmap,
pbalign-doc,
Description: map Pacific Biosciences reads to reference DNA sequences (Python2)
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
format.
.
pbalign is part of the SMRTAnalysis suite. This package provides the
Python library backend.
Package: pbalign-doc
Section: doc
Architecture: all
Depends:
${misc:Depends},
libjs-jquery,
libjs-underscore,
Description: documentation for pbalign
pbalign aligns PacBio reads to reference sequences, filters aligned
reads according to user-specific filtering criteria, and converts the
output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5)
format.
.
pbalign is part of the SMRTAnalysis suite. This package contains its
documentation
|
