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|
#!/usr/bin/make -f
# -*- makefile -*-
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
NUMJOBS=1
ifneq (,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
NUMJOBS = $(patsubst parallel=%,%,$(filter parallel=%,$(DEB_BUILD_OPTIONS)))
endif
DEB_CONFIGURE_EXTRA_FLAGS=--with-dll --with-mt --without-autodep \
--without-makefile-auto-update --with-flat-makefile --without-caution \
--without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ \
--with-build-root=BUILD --without-debug --without-downloaded-vdb
proj=algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/
#ifneq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))
DEB_CONFIGURE_EXTRA_FLAGS += --with-symbols
#endif
#export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie
export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie
export DEB_CFLAGS_MAINT_APPEND=-Wall -pedantic
export DEB_LDFLAGS_MAINT_APPEND=-Wl,--as-needed
DEB_HOST_ARCH := $(shell dpkg-architecture -qDEB_HOST_ARCH)
CFLAGS := $(shell dpkg-buildflags --get CFLAGS)
CPPFLAGS := $(shell dpkg-buildflags --get CPPFLAGS)
CXXFLAGS := $(shell dpkg-buildflags --get CXXFLAGS)
LDFLAGS := $(shell dpkg-buildflags --get LDFLAGS) -Wl,--as-needed
ifneq (,$(findstring mips,$(DEB_HOST_ARCH)))
CXXFLAGS := $(CXXFLAGS:-O%=-O)
DEB_CONFIGURE_EXTRA_FLAGS += FAST_CXXFLAGS=-O
endif
export CFLAGS CPPFLAGS CXXFLAGS LDFLAGS MAKE
# used for run_with_lock
DEB_CONFIGURE_EXTRA_FLAGS += CFLAGS_FOR_BUILD="$(CFLAGS) -fPIE"
DEB_CONFIGURE_EXTRA_FLAGS += LDFLAGS_FOR_BUILD="$(LDFLAGS)"
BLAST2_VERSION=1:$(shell dpkg-parsechangelog | awk '/^Version:/ { print $$2 }')
llp=LD_LIBRARY_PATH
override_dh_auto_configure:
cd c++ && $(llp)=$(CURDIR)/c++/BUILD/lib$${$(llp)+:$$$(llp)} \
CONFIG_SHELL=/bin/bash ./configure $(DEB_CONFIGURE_EXTRA_FLAGS) \
|| (tail -v -n +0 config.log BUILD/status/config.log; exit 1)
override_dh_auto_build-arch:
cd c++/BUILD/build && \
make -j$(NUMJOBS) -f Makefile.flat all_projects="$(proj)"
# make all_r
override_dh_auto_build-indep:
echo "Save time and do nothing for architecture independent builds"
override_dh_auto_test:
-dh_auto_test
-c++/BUILD/build/check.sh concat_err
-cat c++/BUILD/build/check.sh.out_err
instroot = debian/ncbi-blast+/usr
leg_bin = debian/ncbi-blast+-legacy/usr/bin
override_dh_auto_install-arch:
# cp c++/BUILD/lib/*.so $(instroot)/lib/ncbi-blast+/
cp c++/BUILD/bin/* $(instroot)/bin/
override_dh_auto_install-indep:
echo "Nothing to do for architecture independant installs"
override_dh_install-arch:
# dh_install
mv $(instroot)/bin/rpsblast $(instroot)/bin/rpsblast+
mv $(instroot)/bin/seedtop $(instroot)/bin/seedtop+
mv $(instroot)/bin/legacy_blast.pl $(instroot)/bin/legacy_blast
mv $(instroot)/bin/update_blastdb.pl $(instroot)/bin/update_blastdb
mv $(instroot)/bin/windowmasker_2.2.22_adapter.py \
$(instroot)/bin/windowmasker_2.2.22_adapter
# Clean up tests, demos, and internal build tools
rm -f $(instroot)/bin/*test* $(instroot)/bin/seqdb_demo \
$(instroot)/bin/datatool $(instroot)/bin/run_with_lock \
$(instroot)/bin/project_tree_builder
for x in $(instroot)/bin/*; do \
LD_LIBRARY_PATH=c++/BUILD/lib ldd $$x; \
done 2>/dev/null | awk '/BUILD/ { print $$3 }' | sort -u | \
xargs cp -v -t $(instroot)/lib/ncbi-blast+
override_dh_install-indep:
#if test -d $(leg_bin); then cp debian/legacy/legacy.sh $(leg_bin)/; fi
for x in blastall megablast blastpgp bl2seq rpsblast fastacmd formatdb \
seedtop; do \
sed -e "s/.{.*}/$$x/" debian/legacy/legacy.sh > $(leg_bin)/$$x; \
chmod +x $(leg_bin)/$$x; \
done
override_dh_clean:
cp c++/configure.orig configure.orig.save
dh_clean
#Tricky - for each module directory there may be several module files
#or there may be none but then there is still a module named after the
#directory. Clean everything!
-for x in c++/src/objects/* ; do \
(cd "$$x" && ( \
mods="`echo *.module`" ; \
[ "$${mods#*\*}" = "$$mods" ] || mods="`basename $$x`" ; \
for mod in $$mods ; do \
../../../BUILD/build/new_module.sh $$mod purge_sources ; \
done ) ; \
) ; \
done
rm -rf c++/compilers/dll c++/config.log c++/Makefile
rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module
find -name check_exec.pid -delete
rm -rf c++/BUILD
mv configure.orig.save c++/configure.orig
override_dh_gencontrol-indep:
dh_gencontrol -pblast2 -- -v$(BLAST2_VERSION)
dh_gencontrol -Nblast2
%:
dh $@ -Dc++ --with autotools_dev
|
