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Source: clustalx
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
libqt4-dev
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/clustalx.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/clustalx.git
Homepage: http://www.clustal.org/clustal2/
Package: clustalx
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Suggests: clustalw,
texlive-latex-extra,
boxshade
Description: Multiple alignment of nucleic acid and protein sequences (graphical interface)
This package offers a GUI interface for the Clustal multiple sequence
alignment program. It provides an integrated environment for performing
multiple sequence- and profile-alignments to analyse the results.
The sequence alignment is displayed in a window on the screen.
A versatile coloring scheme has been incorporated to highlight conserved
features in the alignment. For professional presentations, one should
use the texshade LaTeX package or boxshade.
.
The pull-down menus at the top of the window allow you to select all the
options required for traditional multiple sequence and profile alignment.
You can cut-and-paste sequences to change the order of the alignment; you can
select a subset of sequences to be aligned; you can select a sub-range of the
alignment to be realigned and inserted back into the original alignment.
.
An alignment quality analysis can be performed and low-scoring segments or
exceptional residues can be highlighted.
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