Package: wise / 2.4.1-19
Metadata
Package | Version | Patches format |
---|---|---|
wise | 2.4.1-19 | 3.0 (quilt) |
Patch series
view the series filePatch | File delta | Description |
---|---|---|
01_welcome csh.patch | (download) |
src/makefile |
2 1 + 1 - 0 ! |
avoid dependency from csh |
02_isnumber.patch | (download) |
src/models/phasemodel.c |
2 1 + 1 - 0 ! |
replace isnumber() (which does not exist on linux) by isdigit(). |
03_doc nodycache.patch | (download) |
docs/wise2.tex |
3 2 + 1 - 0 ! |
documentation bugfix. |
04_wise2 pdflatex update.patch | (download) |
docs/wise2.tex |
13 8 + 5 - 0 ! |
make wise2.tex pdflatex compatible. |
05_glib2.patch | (download) |
src/HMMer2/Makefile |
16 8 + 8 - 0 ! |
to build wise2 with the glib version 2.0 instead of 1.2. |
06_getline.patch | (download) |
src/HMMer2/sqio.c |
68 34 + 34 - 0 ! |
fixed conflicting definitions of getline(). |
07_ld as needed.patch | (download) |
src/models/makefile |
12 6 + 6 - 0 ! |
fix ftbfs with ld --as-needed. Bug-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/wise/+bug/832935 |
08_mayhem.patch | (download) |
src/models/dbac.c |
8 6 + 2 - 0 ! |
fix run time errors detected by mayhem |
09_dnal add return statement.patch | (download) |
src/models/dnal.c |
2 2 + 0 - 0 ! |
--- |
10_fix_path_to_data_files.patch | (download) |
src/models/estwise.c |
4 2 + 2 - 0 ! |
brute force patch to fix the path to the data files to make the tools finding the needed data for the test suite . In principle the PATH should be configurable and the test suite script even contains a parameter (-cf) for this - but this seems to be ignored. . The correct way to deal with this would be a configuration option but I had no intend to spend to much time into some software that was declared to be orphaned (superseded by exonerate). So this primitive patch works to run the test suite successfully (which is not the case without the patch). |
11_consistent_manual_dates.patch | (download) |
docs/dynamite.tex |
2 2 + 0 - 0 ! |
use fixed dates for manuals. These make the build reproducible. I have picked the file modificatin dates of the corresponding source .tex files. |