Package: tigr-glimmer / 3.02b-1

Metadata

Package Version Patches format
tigr-glimmer 3.02b-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
10_gcc4.3.patch | (download)

src/Common/delcher.cc | 1 1 + 0 - 0 !
src/Common/fasta.cc | 2 1 + 1 - 0 !
src/Common/gene.cc | 1 1 + 0 - 0 !
src/Glimmer/anomaly.cc | 1 1 + 0 - 0 !
src/Glimmer/glimmer2.cc | 1 1 + 0 - 0 !
src/Glimmer/glimmer3.cc | 3 1 + 2 - 0 !
src/Glimmer/long-orfs.cc | 2 1 + 1 - 0 !
src/ICM/build-fixed.cc | 1 1 + 0 - 0 !
src/ICM/build-icm.cc | 1 1 + 0 - 0 !
src/ICM/icm.cc | 2 2 + 0 - 0 !
src/ICM/score-fixed.cc | 1 1 + 0 - 0 !
src/Util/entropy-score.cc | 2 1 + 1 - 0 !
src/Util/extract.cc | 2 1 + 1 - 0 !
src/Util/multi-extract.cc | 2 1 + 1 - 0 !
src/Util/start-codon-distrib.cc | 1 1 + 0 - 0 !
src/Util/uncovered.cc | 2 1 + 1 - 0 !
16 files changed, 17 insertions(+), 8 deletions(-)

 fix #461691


mayhem.patch | (download)

src/ICM/build-fixed.cc | 18 13 + 5 - 0 !
src/ICM/build-icm.cc | 16 12 + 4 - 0 !
src/ICM/score-fixed.cc | 16 12 + 4 - 0 !
3 files changed, 37 insertions(+), 13 deletions(-)

 fix crashes reported by mayhem
 See http://www.drpaulcarter.com/cs/common-c-errors.php#4.1
 to make fgetc() more safe.  However, the original problem is
 that for empty strings no space at all is allocated.  This is
 now done in advance.