gap4/gaprc_menu_mito | 2 1 + 1 - 0 !
pregap4/pregap4rc | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 fix help menus
 

tk_utils/help_ext.tcl | 2 1 + 1 - 0 !
tk_utils/help_galeon.tcl | 2 1 + 1 - 0 !
tk_utils/help_int.tcl | 2 1 + 1 - 0 !
tk_utils/help_netscape.tcl | 2 1 + 1 - 0 !
4 files changed, 4 insertions(+), 4 deletions(-)

 debian has /usr/bin/wish

scripts/fasta-split | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 debian usually has /usr/bin/awk

copy_reads/copy_reads.in | 5 4 + 1 - 0 !
gap4/gap4.in | 5 4 + 1 - 0 !
gap5/gap5.in | 5 4 + 1 - 0 !
gap5/gap5_cmd.in | 5 4 + 1 - 0 !
gap5/tg_index.in | 5 4 + 1 - 0 !
gap5/tg_view.in | 5 4 + 1 - 0 !
prefinish/finish_sanger | 5 4 + 1 - 0 !
prefinish/prefinish.in | 5 4 + 1 - 0 !
pregap4/pregap4.in | 5 4 + 1 - 0 !
spin/spin.in | 5 4 + 1 - 0 !
spin_emboss/create_emboss_files | 5 4 + 1 - 0 !
trev/trev.in | 5 4 + 1 - 0 !
12 files changed, 48 insertions(+), 12 deletions(-)

 make sure the main scripts will find the staden.profile
 file when installed to the location where the wrapper will seek for
 the scripts

hetins/hetins.c | 2 2 + 0 - 0 !
stops/stops.c | 2 2 + 0 - 0 !
2 files changed, 4 insertions(+)

 include "xalloc.h" in a few more files that use xcalloc

tk_utils/capture.c | 7 4 + 3 - 0 !
1 file changed, 4 insertions(+), 3 deletions(-)

 replace tmpnam by mkostemp
Bug-Debian: https://bugs.debian.org/825461

eba/conf.c | 3 3 + 0 - 0 !
1 file changed, 3 insertions(+)

 implicite declarations are now breaking the build.
 This patch adds explicite declarations