gap4/gaprc_menu_full | 2 1 + 1 - 0 !
gap4/gaprc_menu_mito | 2 1 + 1 - 0 !
gap5/gap5rc_menu_full | 4 2 + 2 - 0 !
pregap4/pregap4rc | 2 1 + 1 - 0 !
4 files changed, 5 insertions(+), 5 deletions(-)

 fix help menus
 

gap4/gap-error.c | 2 1 + 1 - 0 !
gap4/show_relationships.c | 6 3 + 3 - 0 !
2 files changed, 4 insertions(+), 4 deletions(-)

 build using debian hardening options
 When using -Werror=format-security the following patches are needed

system.mk.in | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 hardening requires propagation of ldflags into all build targets

tk_utils/help_ext.tcl | 2 1 + 1 - 0 !
tk_utils/help_galeon.tcl | 2 1 + 1 - 0 !
tk_utils/help_int.tcl | 2 1 + 1 - 0 !
tk_utils/help_netscape.tcl | 2 1 + 1 - 0 !
4 files changed, 4 insertions(+), 4 deletions(-)

 debian has /usr/bin/wish

scripts/fasta-split | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 debian usually has /usr/bin/awk

copy_reads/copy_reads.in | 5 4 + 1 - 0 !
gap4/gap4.in | 5 4 + 1 - 0 !
gap5/gap5.in | 5 4 + 1 - 0 !
gap5/gap5_cmd.in | 5 4 + 1 - 0 !
gap5/tg_index.in | 5 4 + 1 - 0 !
gap5/tg_view.in | 5 4 + 1 - 0 !
prefinish/finish_sanger | 5 4 + 1 - 0 !
prefinish/prefinish.in | 5 4 + 1 - 0 !
pregap4/pregap4.in | 5 4 + 1 - 0 !
spin/spin.in | 5 4 + 1 - 0 !
spin_emboss/create_emboss_files | 5 4 + 1 - 0 !
trev/trev.in | 5 4 + 1 - 0 !
12 files changed, 48 insertions(+), 12 deletions(-)

 make sure the main scripts will find the staden.profile
 file when installed to the location where the wrapper will seek for
 the scripts