Package: ruby-bio / 1.5.0-2

Metadata

Package Version Patches format
ruby-bio 1.5.0-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
disable_tests_using_chi2.patch | (download)

test/unit/bio/sequence/test_common.rb | 4 4 + 0 - 0 !
1 file changed, 4 insertions(+)

 deactivate tests in test/unit/bio/sequence using chi2
 These tests using randomness fail from time to time (1% of failure). They need
 to be disabled not to create false positive FTBFS.
remove_rubygems.patch | (download)

bin/bioruby | 7 1 + 6 - 0 !
1 file changed, 1 insertion(+), 6 deletions(-)

 remove use of rubygems in bin/bioruby
fix_definition_CutSymbol_in_test_cut_symbol.patch | (download)

test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 ensure that bio::restrictionenzyme::cutsymbol is defined in tests
 loading bio/utils/restriction_enzyme/cut_symbol.rb is not enough.
 bio/utils/restriction_enzyme.rb loads automatically cut_symbol.rb if called.