Package: ruby-bio / 1.4.2-3

Metadata

Package Version Patches format
ruby-bio 1.4.2-3 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
disable test soap.patch | (download)

test/functional/bio/io/test_soapwsdl.rb | 53 0 + 53 - 0 !
1 file changed, 53 deletions(-)

 disable test that requires network.
fix_definition_CutSymbol_in_test_cut_symbol.patch | (download)

test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 ensure that bio::restrictionenzyme::cutsymbol is defined in tests
 loading bio/utils/restriction_enzyme/cut_symbol.rb is not enough.
 bio/utils/restriction_enzyme.rb loads automatically cut_symbol.rb if called.
do_not_rely_on_keys_order_for_hashes.patch | (download)

test/unit/bio/db/test_soft.rb | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 test bug fix: order of hash keys are not guaranteed
 Test bug fix: Bio::TestSOFT#test_dataset: order of hash keys are
 not guaranteed.
disable_tests_using_chi2.patch | (download)

test/unit/bio/sequence/test_common.rb | 16 9 + 7 - 0 !
1 file changed, 9 insertions(+), 7 deletions(-)

 deactivate tests in test/unit/bio/sequence using chi2
 These tests using randomness fail from time to time (1% of failure). They need
 to be disabled not to create false positive FTBFS.
fix_shebang_for_examples.patch | (download)

sample/biofetch.rb | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 ensure we have the correct shebang in examples