test/pymol-test | 43 43 + 0 - 0 !
test/run | 5 3 + 2 - 0 !
2 files changed, 46 insertions(+), 2 deletions(-)

 patch to make the test-suite work during debian build-time.

modules/pymol/povray.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 adjust povray options

examples/chempy/generate_amber.py | 3 2 + 1 - 0 !
examples/chempy/generate_mmff.py | 3 2 + 1 - 0 !
examples/devel/povray01.py | 2 1 + 1 - 0 !
modules/pymol/wizard/demo.py | 2 1 + 1 - 0 !
4 files changed, 6 insertions(+), 4 deletions(-)

 patch to put let the examples find their data.

modules/chempy/tinker/__init__.py | 1 1 + 0 - 0 !
modules/pymol/wizard/mutagenesis.py | 6 2 + 4 - 0 !
2 files changed, 3 insertions(+), 4 deletions(-)

 patch replacing chempy_data_path by pymol_path

modules/pymol/__init__.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fixes an import that does not behave well.

contrib/uiuc/plugins//include/import_graphics_plugin.h | 111 0 + 111 - 0 !
contrib/uiuc/plugins//include/molfile_plugin.h | 26 9 + 17 - 0 !
contrib/uiuc/plugins//molfile_plugin/src/inthash.h | 73 0 + 73 - 0 !
contrib/uiuc/plugins//molfile_plugin/update.py | 12 6 + 6 - 0 !
setup.py | 8 4 + 4 - 0 !
5 files changed, 19 insertions(+), 211 deletions(-)

 build the vmd plugin

modules/pymol/importing.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix location lookup for cymk.png
Bug-Debian: http://bugs.debian.org/490067

modules/pymol/fitting.py | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 another path fix
Bug-Debian: http://bugs.debian.org/511810

modules/pmg_tk/skins/normal/__init__.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 output debian copyright file as license
 We don't install LICENSE to PYMOL_PATH.
 The 'Output License Terms' results in a 'Error: no license terms found.'.
 Output the Debian copyright file, which fully reproduces LICENSE too.

modules/pymol/exporting.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix png generation in batch mode

modules/pymol/__init__.py | 6 6 + 0 - 0 !
1 file changed, 6 insertions(+)

 fix importing of pymol by setting pymol_path explicitely
Bug-Debian: http://bugs.debian.org/556878

modules/pmg_tk/startup/autodock.py | 3857 3857 + 0 - 0 !
1 file changed, 3857 insertions(+)

 include the autodock plugin version 2.1.1

setup.py | 24 12 + 12 - 0 !
1 file changed, 12 insertions(+), 12 deletions(-)

---

layer0/Crystal.c | 5 3 + 2 - 0 !
layer0/ShaderMgr.c | 26 18 + 8 - 0 !
layer1/CGO.c | 4 2 + 2 - 0 !
layer1/CGO.h | 1 0 + 1 - 0 !
layer1/Ortho.c | 17 13 + 4 - 0 !
layer1/Ortho.h | 1 1 + 0 - 0 !
layer1/P.c | 31 27 + 4 - 0 !
layer1/Symmetry.c | 35 31 + 4 - 0 !
layer1/Symmetry.h | 2 2 + 0 - 0 !
layer2/ObjectMap.c | 7 7 + 0 - 0 !
layer2/ObjectMap.h | 1 1 + 0 - 0 !
layer2/ObjectMesh.c | 34 30 + 4 - 0 !
layer2/ObjectMesh.h | 1 1 + 0 - 0 !
layer2/ObjectVolume.c | 100 50 + 50 - 0 !
layer3/Executive.c | 84 47 + 37 - 0 !
layer3/Selector.c | 4 2 + 2 - 0 !
modules/pmg_tk/skins/normal/volume.py | 6 6 + 0 - 0 !
modules/pymol/__init__.py | 36 24 + 12 - 0 !
modules/pymol/menu.py | 2 1 + 1 - 0 !
modules/pymol/querying.py | 22 6 + 16 - 0 !
setup.py | 151 114 + 37 - 0 !
setup3.py | 1 0 + 1 - 0 !
22 files changed, 386 insertions(+), 185 deletions(-)

---