Package: pbgenomicconsensus / 2.1.0-1

Metadata

Package Version Patches format
pbgenomicconsensus 2.1.0-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
spelling.patch | (download)

doc/VariantCallerFunctionalSpecification.rst | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix spelling error
verbose testing.patch | (download)

Makefile | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

 make tests run verbosely
 The cram tests in particular don't output anything until the suite is
 finished. On slower buildd's, this might make the build time-out due to
 apparent lack of activity and report FTBFS.
disable arrow tests.patch | (download)

Makefile | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 disable tests for arrow
 These tests need ConsensusCore2, and the version currently packaged in
 Debian is newer than this GenomicConsensus version and not compatible.
 The tests are thus expected to fail in this situation.
no poa convenience script.patch | (download)

tests/cram/poa-all4mer.t | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 don't use poa convenience script in test suite
 We can't install that convenience script because it conflicts with another
 package, so change the test suite to use `variantCaller --algorithm=poa`
 instead.
missing testdata.patch | (download)

tests/unit/test_tool_contract.py | 27 16 + 11 - 0 !
1 file changed, 16 insertions(+), 11 deletions(-)

 disable test require missing package pbtestdata
 pbtestdata is not yet available in Debian (due to now resolved issue
 of missing explicit license terms), so we cannot run this test.