src/MuscleInterface.cpp | 26 13 + 13 - 0 !
1 file changed, 13 insertions(+), 13 deletions(-)

 we are using debian packaged libmuscle
 These includes are wrong anyway since this should be done via -I../muscle compiler option

setup.py | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 no idea for what purpose setup.py is used - in any case
 it is seeking for a non-existing README file.

src/Makefile.am | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 upstream per default installs into ../bin

src/Makefile.am | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 there is no point in keeping rpath to a system library

Parsnp.py | 1 1 + 0 - 0 !
1 file changed, 1 insertion(+)

 specify interpreter of executable script

Parsnp.py | 42 14 + 28 - 0 !
1 file changed, 14 insertions(+), 28 deletions(-)

 fix path to debian installed tools
 Parsnp uses an unusual way to call external tools.
 At first these are linked to some place relative to the scrip
 location which is definitely not allowed on /usr in a Debian
 installation.  Later these symlinks are used for calling the tools.
 .
 This patch calls the according tools directly at their Debian
 locations (and the Debian names).

Makefile.am | 2 1 + 1 - 0 !
src/Makefile.am | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 drop -m64

src/Makefile.am | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 fix build with -wl,--as-needed
 Move -std=gnu++0x to CXXFLAGS and add libraries
 in LIBS instead of LDFLAGS.