Package: mothur / 1.38.1.1-1

Metadata

Package Version Patches format
mothur 1.38.1.1-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
0001 Fix catchall command.patch | (download)

source/commands/catchallcommand.cpp | 6 6 + 0 - 0 !
1 file changed, 6 insertions(+)

 fix catchall command

This removes a workaround that is better fixed in Catchall than in
Mothur, so I did that (packaged in bio-linux-catchall just now as I
don't have the source compiling yet.)

This patch is a refreshed version of a patch without authorship
information.

0002 Add hardening flags.patch | (download)

source/uchime_src/mk | 7 5 + 2 - 0 !
1 file changed, 5 insertions(+), 2 deletions(-)

 add hardening flags.


0003 Fix VERSION variable in the makefile.patch | (download)

source/makefile | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix version variable in the makefile.


spelling.patch | (download)

source/commandfactory.cpp | 2 1 + 1 - 0 !
source/commands/chimerauchimecommand.cpp | 2 1 + 1 - 0 !
source/commands/chimeravsearchcommand.cpp | 2 1 + 1 - 0 !
source/commands/chopseqscommand.cpp | 2 1 + 1 - 0 !
source/commands/classifyotucommand.cpp | 2 1 + 1 - 0 !
source/commands/classifyotucommand.h | 2 1 + 1 - 0 !
source/commands/classifytreecommand.cpp | 12 6 + 6 - 0 !
source/commands/clusterfragmentscommand.cpp | 2 1 + 1 - 0 !
source/commands/getcoremicrobiomecommand.cpp | 2 1 + 1 - 0 !
source/commands/getgroupscommand.cpp | 2 1 + 1 - 0 !
source/commands/getotuscommand.cpp | 2 1 + 1 - 0 !
source/commands/indicatorcommand.cpp | 4 2 + 2 - 0 !
source/commands/indicatorcommand.h | 2 1 + 1 - 0 !
source/commands/lefsecommand.cpp | 2 1 + 1 - 0 !
source/commands/mergetaxsummarycommand.cpp | 2 1 + 1 - 0 !
source/commands/removegroupscommand.cpp | 2 1 + 1 - 0 !
source/commands/removeotuscommand.cpp | 2 1 + 1 - 0 !
source/commands/setcurrentcommand.cpp | 2 1 + 1 - 0 !
source/commands/summarytaxcommand.cpp | 2 1 + 1 - 0 !
source/commands/trimseqscommand.cpp | 2 1 + 1 - 0 !
source/commands/unifracunweightedcommand.cpp | 2 1 + 1 - 0 !
source/commands/unifracweightedcommand.cpp | 2 1 + 1 - 0 !
source/uchime_src/help.h | 2 1 + 1 - 0 !
23 files changed, 29 insertions(+), 29 deletions(-)

 fix spelling