Package: libgo-perl / 0.15-5

Metadata

Package Version Patches format
libgo-perl 0.15-5 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
fix whatis entries.patch | (download)

GO/Handlers/base.pm | 2 1 + 1 - 0 !
GO/Handlers/go_def.pm | 2 1 + 1 - 0 !
GO/Handlers/go_ont.pm | 2 1 + 1 - 0 !
GO/Handlers/go_xref.pm | 2 1 + 1 - 0 !
GO/Handlers/godb_prestore.pm | 2 1 + 1 - 0 !
GO/Handlers/obo_godb_flat.pm | 2 1 + 1 - 0 !
GO/Handlers/obo_html.pm | 2 1 + 1 - 0 !
GO/Handlers/obo_text.pm | 2 1 + 1 - 0 !
GO/Handlers/owl_to_obo_text.pm | 2 1 + 1 - 0 !
GO/Handlers/summary.pm | 2 1 + 1 - 0 !
GO/Handlers/tbl.pm | 2 1 + 1 - 0 !
GO/Handlers/text_html.pm | 2 1 + 1 - 0 !
GO/Handlers/xsl_base.pm | 2 1 + 1 - 0 !
GO/IO/Dotty.pm | 2 1 + 1 - 0 !
GO/IO/OBDXML.pm | 2 1 + 1 - 0 !
GO/IO/ObanOwl.pm | 2 1 + 1 - 0 !
GO/IO/RDFXML.pm | 2 1 + 1 - 0 !
GO/IO/go_assoc.pm | 2 1 + 1 - 0 !
GO/Model/Association.pm | 2 1 + 1 - 0 !
GO/Model/CrossProduct.pm | 2 1 + 1 - 0 !
GO/Model/DB.pm | 2 1 + 1 - 0 !
GO/Model/Evidence.pm | 2 1 + 1 - 0 !
GO/Model/GeneProduct.pm | 2 1 + 1 - 0 !
GO/Model/GraphIterator.pm | 2 1 + 1 - 0 !
GO/Model/LogicalDefinition.pm | 2 1 + 1 - 0 !
GO/Model/Modification.pm | 2 1 + 1 - 0 !
GO/Model/Ontology.pm | 2 1 + 1 - 0 !
GO/Model/Path.pm | 2 1 + 1 - 0 !
GO/Model/Property.pm | 2 1 + 1 - 0 !
GO/Model/Relationship.pm | 2 1 + 1 - 0 !
GO/Model/Restriction.pm | 2 1 + 1 - 0 !
GO/Model/Root.pm | 2 1 + 1 - 0 !
GO/Model/Seq.pm | 2 1 + 1 - 0 !
GO/Model/Species.pm | 2 1 + 1 - 0 !
GO/Model/Term.pm | 2 1 + 1 - 0 !
GO/Model/TreeIterator.pm | 2 1 + 1 - 0 !
GO/Model/Xref.pm | 2 1 + 1 - 0 !
GO/ObjCache.pm | 2 1 + 1 - 0 !
GO/Parsers/locuslink_parser.pm | 2 1 + 1 - 0 !
GO/Parsers/ncbi_taxonomy_parser.pm | 2 1 + 1 - 0 !
GO/Parsers/obj_emitter.pm | 2 1 + 1 - 0 !
GO/Utils.pm | 4 4 + 0 - 0 !
scripts/go-dag-summary.pl | 2 1 + 1 - 0 !
scripts/go-export-graph.pl | 2 1 + 1 - 0 !
scripts/go2fmt.pl | 6 1 + 5 - 0 !
45 files changed, 48 insertions(+), 48 deletions(-)

 gives a whatis entry to each manpages
 A manual page should start with a `NAME' section, which lists the name and a
 brief description of the page seperated by '\-'. These sections are parsed by
 `mandb' and stored in a database for the use of `apropos' and `whatis'.

fix missing manpages | (download)

scripts/go-apply-xslt | 16 16 + 0 - 0 !
scripts/go-export-prolog.pl | 12 12 + 0 - 0 !
scripts/go2error_report | 14 14 + 0 - 0 !
3 files changed, 42 insertions(+)

 adds minimalistic manpages
 This patch adds minimalistic POD documentation to scripts that are
 installed in /usr/bin. Manual pages will be autogenerated and
 installed during the build process.

fix pod.patch | (download)

GO/Parser.pm | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 corrects pod documentation
fix_test_xsltproc | (download)

GO/xsl/oboxml_to_owl.xsl | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 xslt spec does not allow a name with "xmlns",
fix_hash_in_go_io_dotty.patch | (download)

GO/IO/Dotty.pm | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fixes error, which appears when module go::io::dotty is attempted to
 be used: 
 "Can't use a hash as a reference at /usr/share/perl5/GO/IO/Dotty.pm line 104"


spelling.patch | (download)

GO/Handlers/obj.pm | 2 1 + 1 - 0 !
GO/Model/Association.pm | 2 1 + 1 - 0 !
GO/Model/Evidence.pm | 2 1 + 1 - 0 !
GO/Model/Graph.pm | 2 1 + 1 - 0 !
4 files changed, 4 insertions(+), 4 deletions(-)

 start fixing some spelling issues


spelling2.patch | (download)

GO/Model/Evidence.pm | 2 1 + 1 - 0 !
GO/Model/GeneProduct.pm | 2 1 + 1 - 0 !
GO/Model/GraphIterator.pm | 4 2 + 2 - 0 !
GO/Model/Root.pm | 2 1 + 1 - 0 !
GO/Model/Seq.pm | 2 1 + 1 - 0 !
GO/Model/Species.pm | 3 1 + 2 - 0 !
GO/Model/Term.pm | 4 2 + 2 - 0 !
GO/Model/Xref.pm | 2 1 + 1 - 0 !
GO/Parser.pm | 2 1 + 1 - 0 !
go-perl.pod | 2 1 + 1 - 0 !
10 files changed, 12 insertions(+), 13 deletions(-)

 fixes remaining spelling warnings in man pages