Package: libchado-perl / 1.23-2

Metadata

Package Version Patches format
libchado-perl 1.23-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
fix_perl_headers | (download)

bin/gmod_bulk_load_pubmed.pl | 2 1 + 1 - 0 !
bin/load_ncbi_taxonomy.pl | 2 1 + 1 - 0 !
bin/load_taxonomy_cvterms.pl | 2 1 + 1 - 0 !
load/bin/bulk_load_gff3.PLS | 2 1 + 1 - 0 !
load/bin/load_gff3.PLS | 2 1 + 1 - 0 !
5 files changed, 5 insertions(+), 5 deletions(-)

 default perl interpreter path is wrong
force_SIMPLE | (download)

Makefile.PL | 7 4 + 3 - 0 !
1 file changed, 4 insertions(+), 3 deletions(-)

 remove "simple install" question from setup
fix_spelling_manpage | (download)

bin/gmod_gff3_preprocessor.pl | 4 2 + 2 - 0 !
bin/gmod_make_gff_from_dbxref.pl | 2 1 + 1 - 0 !
bin/gmod_materialized_view_tool.pl | 2 1 + 1 - 0 !
lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm | 18 9 + 9 - 0 !
lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm | 2 1 + 1 - 0 !
lib/Bio/GMOD/Config.pm | 2 1 + 1 - 0 !
lib/Bio/GMOD/Config2.pm | 4 2 + 2 - 0 !
lib/Bio/GMOD/DB/Adapter.pm | 6 3 + 3 - 0 !
load/bin/bulk_load_gff3.PLS | 4 2 + 2 - 0 !
9 files changed, 22 insertions(+), 22 deletions(-)

 fix spelling errors in man pages
Last-Updated: 09/11/11

fix_manpages | (download)

bin/gmod_bulk_load_pubmed.pl | 2 1 + 1 - 0 !
bin/gmod_load_cvterms.pl | 2 1 + 1 - 0 !
bin/gmod_make_cvtermpath.pl | 2 1 + 1 - 0 !
3 files changed, 3 insertions(+), 3 deletions(-)

 add missing what-is description in man pages of binaries
Last-Updated: 09/11/11

setBinPathForBuilder | (download)

lib/Bio/Chado/Builder.pm | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

update path for binaries to match gmod chado installation

remove_pl_extension.patch | (download)

INSTALL.Chado | 6 3 + 3 - 0 !
lib/Bio/Chado/Builder.pm | 4 2 + 2 - 0 !
2 files changed, 5 insertions(+), 5 deletions(-)

 libdbix-dbstag-perl binaries have perl extension removed,
 current scripts must call those binaries without extension too