test/test.py | 3 3 + 0 - 0 !
test/tss_test.py | 3 3 + 0 - 0 !
2 files changed, 6 insertions(+)

 matplotlibs default backend of tkagg doesn't seem to be
 available by default. This forces the use of simpler backend for
 testing.

setup.py | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 fix missing tuple index.

doc/conf.py | 9 8 + 1 - 0 !
1 file changed, 8 insertions(+), 1 deletion(-)

 add configuration necessary to have sphinx build
 man pages from the provided reStructured text documentation.

doc/tss.rst | 76 38 + 38 - 0 !
1 file changed, 38 insertions(+), 38 deletions(-)

 at package build time some differences to the expected values are
  occuring.  Skip these tests for the moment.

doc/conf.py | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 adapt to sphinx 1.3

HTSeq/__init__.py | 12 6 + 6 - 0 !
1 file changed, 6 insertions(+), 6 deletions(-)

 update pysam interface for 0.8.4
 In pysam 0.8.4, interfaces that have been deprecated in
 0.8.1 have been removed. This patch makes the necessary
 changes for 0.8.4 compatibility.