README | 8 7 + 1 - 0 !
1 file changed, 7 insertions(+), 1 deletion(-)

 edit readme to explain that this is not an official upstream build

CMakeLists.txt | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 install only a single copyright file
 Avoid duplication of COPYING and debian/copyright.  A symlink is provided
 between the two.

docs/man/man1/gmx-anadock.1 | 8 4 + 4 - 0 !
docs/man/man1/gmx-anaeig.1 | 24 12 + 12 - 0 !
docs/man/man1/gmx-analyze.1 | 24 12 + 12 - 0 !
docs/man/man1/gmx-angle.1 | 18 9 + 9 - 0 !
docs/man/man1/gmx-bar.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-bundle.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-check.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-chi.1 | 26 13 + 13 - 0 !
docs/man/man1/gmx-cluster.1 | 28 14 + 14 - 0 !
docs/man/man1/gmx-clustsize.1 | 18 9 + 9 - 0 !
docs/man/man1/gmx-confrms.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-convert-tpr.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-covar.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-current.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-density.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-densmap.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-densorder.1 | 18 9 + 9 - 0 !
docs/man/man1/gmx-dielectric.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-dipoles.1 | 30 15 + 15 - 0 !
docs/man/man1/gmx-disre.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-distance.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-do_dssp.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-dos.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-dump.1 | 8 4 + 4 - 0 !
docs/man/man1/gmx-dyecoupl.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-dyndom.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-editconf.1 | 22 11 + 11 - 0 !
docs/man/man1/gmx-eneconv.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-enemat.1 | 18 9 + 9 - 0 !
docs/man/man1/gmx-energy.1 | 28 14 + 14 - 0 !
docs/man/man1/gmx-filter.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-freevolume.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-gangle.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-genconf.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-genion.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-genrestr.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-grompp.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-gyrate.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-h2order.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-hbond.1 | 28 14 + 14 - 0 !
docs/man/man1/gmx-helix.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-helixorient.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-help.1 | 2 1 + 1 - 0 !
docs/man/man1/gmx-hydorder.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-insert-molecules.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-lie.1 | 8 4 + 4 - 0 !
docs/man/man1/gmx-make_edi.1 | 26 13 + 13 - 0 !
docs/man/man1/gmx-make_ndx.1 | 6 3 + 3 - 0 !
docs/man/man1/gmx-mdmat.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-mdrun.1 | 46 23 + 23 - 0 !
docs/man/man1/gmx-mindist.1 | 18 9 + 9 - 0 !
docs/man/man1/gmx-mk_angndx.1 | 6 3 + 3 - 0 !
docs/man/man1/gmx-morph.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-msd.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-nmeig.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-nmens.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-nmtraj.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-order.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-pdb2gmx.1 | 22 11 + 11 - 0 !
docs/man/man1/gmx-pme_error.1 | 8 4 + 4 - 0 !
docs/man/man1/gmx-polystat.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-potential.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-principal.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-protonate.1 | 8 4 + 4 - 0 !
docs/man/man1/gmx-rama.1 | 8 4 + 4 - 0 !
docs/man/man1/gmx-rdf.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-rms.1 | 20 10 + 10 - 0 !
docs/man/man1/gmx-rmsdist.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-rmsf.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-rotacf.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-rotmat.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-saltbr.1 | 8 4 + 4 - 0 !
docs/man/man1/gmx-sans.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-sasa.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-saxs.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-select.1 | 18 9 + 9 - 0 !
docs/man/man1/gmx-sham.1 | 22 11 + 11 - 0 !
docs/man/man1/gmx-sigeps.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-solvate.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-sorient.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-spatial.1 | 10 5 + 5 - 0 !
docs/man/man1/gmx-spol.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-tcaf.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-traj.1 | 20 10 + 10 - 0 !
docs/man/man1/gmx-trjcat.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-trjconv.1 | 26 13 + 13 - 0 !
docs/man/man1/gmx-trjorder.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-tune_pme.1 | 54 27 + 27 - 0 !
docs/man/man1/gmx-vanhove.1 | 16 8 + 8 - 0 !
docs/man/man1/gmx-velacc.1 | 14 7 + 7 - 0 !
docs/man/man1/gmx-view.1 | 6 3 + 3 - 0 !
docs/man/man1/gmx-wham.1 | 26 13 + 13 - 0 !
docs/man/man1/gmx-wheel.1 | 6 3 + 3 - 0 !
docs/man/man1/gmx-x2top.1 | 12 6 + 6 - 0 !
docs/man/man1/gmx-xpm2ps.1 | 18 9 + 9 - 0 !
docs/man/man7/gromacs.7 | 4 2 + 2 - 0 !
96 files changed, 724 insertions(+), 724 deletions(-)

 sweep up hyphen-used-as-minus-sign man page errors
 This patch should be temporary, pending fixes to the man page generation in
 5.0-final that will take the escaping into account.

docs/man/man1/gmx-mdrun.1 | 2 1 + 1 - 0 !
src/contrib/mkice.c | 2 1 + 1 - 0 !
src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_file_generator/nbnxn_kernel_simd_template.c.pre | 2 1 + 1 - 0 !
src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.c | 2 1 + 1 - 0 !
src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn.c | 2 1 + 1 - 0 !
src/programs/mdrun/mdrun.cpp | 4 2 + 2 - 0 !
6 files changed, 7 insertions(+), 7 deletions(-)

 assorted minor spelling fixes