Package: gbrowse / 2.54+dfsg-3

Metadata

Package Version Patches format
gbrowse 2.54+dfsg-3 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
debian packaging patch | (download)

bin/gbrowse_metadb_config.pl | 5 5 + 0 - 0 !
conf/GBrowse.conf | 6 3 + 3 - 0 !
etc/default/gbrowse-slave | 7 3 + 4 - 0 !
etc/init.d/gbrowse-slave | 10 5 + 5 - 0 !
htdocs/index.html | 14 7 + 7 - 0 !
install_util/GBrowseInstall.pm | 82 80 + 2 - 0 !
6 files changed, 103 insertions(+), 21 deletions(-)

 
 fix install directories to match
 Debian Policy
gbrowse slave fix_defaults_path | (download)

etc/init.d/gbrowse-slave | 7 4 + 3 - 0 !
1 file changed, 4 insertions(+), 3 deletions(-)

 
 update path to be debian compliant, add description
Last-Updated: 2012-02-19
manpages.patch | (download)

bin/gbrowse_grow_cloud_vol.pl | 4 2 + 2 - 0 !
bin/gtf2gff3.pl | 4 2 + 2 - 0 !
bin/wiggle2gff3.pl | 2 1 + 1 - 0 !
lib/Bio/DB/GFF/Aggregator/match_gap.pm | 1 0 + 1 - 0 !
lib/Bio/DB/GFF/Aggregator/reftranscript.pm | 2 1 + 1 - 0 !
lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm | 1 0 + 1 - 0 !
lib/Bio/Graphics/Browser2/DataBase.pm | 4 4 + 0 - 0 !
lib/Bio/Graphics/Browser2/DataSource.pm | 10 10 + 0 - 0 !
lib/Bio/Graphics/Browser2/Plugin.pm | 2 1 + 1 - 0 !
lib/Bio/Graphics/Browser2/Region.pm | 6 6 + 0 - 0 !
lib/Bio/Graphics/Browser2/Render.pm | 6 6 + 0 - 0 !
lib/Bio/Graphics/Browser2/RenderPanels.pm | 7 7 + 0 - 0 !
lib/Legacy/Graphics/Browser.pm | 6 6 + 0 - 0 !
13 files changed, 46 insertions(+), 9 deletions(-)

 
 upstream pages contain errors
fix_pop_url | (download)

conf/yeast_chr1+2.conf | 2 1 + 1 - 0 !
conf/yeast_renderfarm.conf | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 
 update url for details in example conf files to match /gb2 instead of cgi-bin/gb2
skipRenderFarmTest_UpstreamBug12 | (download)

t/03.render.t | 3 2 + 1 - 0 !
t/04.remoteserver.t | 3 2 + 1 - 0 !
t/06.featuresearch.t | 3 2 + 1 - 0 !
3 files changed, 6 insertions(+), 3 deletions(-)

 
 there is an upstream bug with renderfarm involved
 tests. Upstream bug id 12 has been created witj instructions to
 solve the issue. Runtime has been tested with no issue.
 This patch remove tests using renderfarm feature.
skip_check_installed_test.patch | (download)

install_util/GBrowseInstall.pm | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

 
 for debian program should not check
 for installed files
Last-Updated: 2012-09-20
source_init_functions | (download)

etc/init.d/gbrowse-slave | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 
 follow debian policy to add init-functions