Package: gbrowse / 2.48~dfsg-1

Metadata

Package Version Patches format
gbrowse 2.48~dfsg-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
debian packaging patch | (download)

bin/gbrowse_metadb_config.pl | 5 5 + 0 - 0 !
conf/GBrowse.conf | 6 3 + 3 - 0 !
etc/default/gbrowse-slave | 7 3 + 4 - 0 !
etc/init.d/gbrowse-slave | 10 5 + 5 - 0 !
htdocs/index.html | 14 7 + 7 - 0 !
install_util/GBrowseInstall.pm | 83 81 + 2 - 0 !
6 files changed, 104 insertions(+), 21 deletions(-)

---
gbrowse slave fix_defaults_path | (download)

etc/init.d/gbrowse-slave | 7 4 + 3 - 0 !
1 file changed, 4 insertions(+), 3 deletions(-)

 update path to be debian compliant, add description
Last-Updated: 19/02/2012

manpages.patch | (download)

bin/gtf2gff3.pl | 4 2 + 2 - 0 !
bin/wiggle2gff3.pl | 2 1 + 1 - 0 !
lib/Bio/DB/GFF/Aggregator/match_gap.pm | 1 0 + 1 - 0 !
lib/Bio/DB/GFF/Aggregator/reftranscript.pm | 2 1 + 1 - 0 !
lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm | 1 0 + 1 - 0 !
lib/Bio/Graphics/Browser2/DataBase.pm | 4 4 + 0 - 0 !
lib/Bio/Graphics/Browser2/DataSource.pm | 10 10 + 0 - 0 !
lib/Bio/Graphics/Browser2/Plugin.pm | 2 1 + 1 - 0 !
lib/Bio/Graphics/Browser2/Region.pm | 6 6 + 0 - 0 !
lib/Bio/Graphics/Browser2/Render.pm | 6 6 + 0 - 0 !
lib/Bio/Graphics/Browser2/RenderPanels.pm | 7 7 + 0 - 0 !
lib/Legacy/Graphics/Browser.pm | 6 6 + 0 - 0 !
12 files changed, 44 insertions(+), 7 deletions(-)

---
fix_pop_url | (download)

conf/yeast_chr1+2.conf | 2 1 + 1 - 0 !
conf/yeast_renderfarm.conf | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 update url for details in example conf files to match /gb2 instead of cgi-bin/gb2

skipDeferedRenderingTests | (download)

t/05.deferredrendering.t | 5 3 + 2 - 0 !
1 file changed, 3 insertions(+), 2 deletions(-)

 causes rando failure on different archs
As tests are arch independant and functional tests, skip those
 to allow Debian build whatever current ram/cpu available (no timeout issue)
skipRenderFarmTest_UpstreamBug12 | (download)

t/03.render.t | 3 2 + 1 - 0 !
t/04.remoteserver.t | 3 2 + 1 - 0 !
t/06.featuresearch.t | 3 2 + 1 - 0 !
3 files changed, 6 insertions(+), 3 deletions(-)

 there is an upstream bug with renderfarm involved
 tests. Upstream bug id 12 has been created witj instructions to
 solve the issue. Runtime has been tested with no issue.
 This patch remove tests using renderfarm feature.