Package: ffindex / 0.9.6.1-1

Metadata

Package Version Patches format
ffindex 0.9.6.1-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
Makefile | (download)

Makefile | 13 3 + 10 - 0 !
src/Makefile | 43 24 + 19 - 0 !
src/ffindex_apply.c | 4 2 + 2 - 0 !
src/ffindex_build.c | 4 2 + 2 - 0 !
src/ffindex_from_fasta.c | 4 2 + 2 - 0 !
src/ffindex_get.c | 5 2 + 3 - 0 !
src/ffindex_modify.c | 11 3 + 8 - 0 !
7 files changed, 38 insertions(+), 46 deletions(-)

 makefile fixes
  * make Makefile DESTDIR-aware
  * other changes to allow help2man to work better.
  * deinstall -> uninstall
  .
  Upstream is aware but not interested in DESTDIR.
hardening | (download)

src/Makefile | 5 5 + 0 - 0 !
1 file changed, 5 insertions(+)

 hardening flags
num_max_entries_bug | (download)

src/ffindex.c | 5 3 + 2 - 0 !
1 file changed, 3 insertions(+), 2 deletions(-)

 index pointer used before checking for null
40000000_bug | (download)

src/ffindex.c | 2 1 + 1 - 0 !
src/ffindex.h | 4 4 + 0 - 0 !
src/ffindex_apply | binary
src/ffindex_apply.c | 4 3 + 1 - 0 !
src/ffindex_build.c | 2 2 + 0 - 0 !
src/ffindex_from_fasta.c | 2 2 + 0 - 0 !
src/ffindex_get.c | 2 2 + 0 - 0 !
src/ffindex_modify.c | 4 3 + 1 - 0 !
8 files changed, 17 insertions(+), 3 deletions(-)

 40000000 bug
 The default value 40000000 for FFINDEX_MAX_INDEX_ENTRIES_DEFAULT is too high for a machine with 2G (or less) RAM.
 Bug fixed by introducing an environment variable FFINDEX_MAX_INDEX_ENTRIES to control the value.