Package: fastaq / 1.5.0-1

Metadata

Package Version Patches format
fastaq 1.5.0-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
delay import statements for manpage creation.patch | (download)

scripts/fastaq_capillary_to_pairs | 5 4 + 1 - 0 !
scripts/fastaq_chunker | 5 4 + 1 - 0 !
scripts/fastaq_count_sequences | 5 4 + 1 - 0 !
scripts/fastaq_deinterleave | 5 4 + 1 - 0 !
scripts/fastaq_enumerate_names | 5 4 + 1 - 0 !
scripts/fastaq_expand_nucleotides | 5 4 + 1 - 0 !
scripts/fastaq_extend_gaps | 5 4 + 1 - 0 !
scripts/fastaq_fasta_to_fastq | 5 4 + 1 - 0 !
scripts/fastaq_filter | 5 4 + 1 - 0 !
scripts/fastaq_get_ids | 5 4 + 1 - 0 !
scripts/fastaq_get_seq_flanking_gaps | 5 4 + 1 - 0 !
scripts/fastaq_insert_or_delete_bases | 8 5 + 3 - 0 !
scripts/fastaq_interleave | 5 4 + 1 - 0 !
scripts/fastaq_long_read_simulate | 7 4 + 3 - 0 !
scripts/fastaq_make_random_contigs | 5 4 + 1 - 0 !
scripts/fastaq_merge | 5 4 + 1 - 0 !
scripts/fastaq_replace_bases | 5 4 + 1 - 0 !
scripts/fastaq_reverse_complement | 5 4 + 1 - 0 !
scripts/fastaq_scaffolds_to_contigs | 5 4 + 1 - 0 !
scripts/fastaq_search_for_seq | 5 4 + 1 - 0 !
scripts/fastaq_sequence_trim | 5 4 + 1 - 0 !
scripts/fastaq_split_by_base_count | 6 4 + 2 - 0 !
scripts/fastaq_strip_illumina_suffix | 5 4 + 1 - 0 !
scripts/fastaq_to_fake_qual | 5 4 + 1 - 0 !
scripts/fastaq_to_fasta | 5 4 + 1 - 0 !
scripts/fastaq_to_mira_xml | 5 4 + 1 - 0 !
scripts/fastaq_to_orfs_gff | 5 4 + 1 - 0 !
scripts/fastaq_to_perfect_reads | 10 6 + 4 - 0 !
scripts/fastaq_to_quasr_primers_file | 5 4 + 1 - 0 !
scripts/fastaq_to_random_subset | 8 5 + 3 - 0 !
scripts/fastaq_to_tiling_bam | 8 5 + 3 - 0 !
scripts/fastaq_to_unique_by_id | 5 4 + 1 - 0 !
scripts/fastaq_translate | 5 4 + 1 - 0 !
scripts/fastaq_trim_Ns_at_end | 5 4 + 1 - 0 !
scripts/fastaq_trim_ends | 5 4 + 1 - 0 !
35 files changed, 145 insertions(+), 47 deletions(-)

 delay import of fastaq modules by the python executables 
 Man pages for this package are being automatically created with through the
 help2man wrapper called usage_to_man. help2man calls the python executables
 with the -h option and converts the usage into a man page.
 .
 The first step done by all the executables is the import of the modules deployed
 by this package. Since the package is not installed in the system at build time,
 the man pages would never be properly created.
 .
 This patch solves this problem by importing the modules in this package after
 the argument parsing code.
 .
 Upstream prefered to keep the code as it is for styling reasons, which is
 perfectly reasonable  
 .
 fastaq (1.5.0-1) UNRELEASED; urgency=low
 .
   * Initial release (Closes: #1234)