delay import statements for manpage creation.patch | (download) |
scripts/fastaq_capillary_to_pairs |
5 4 + 1 - 0 !
scripts/fastaq_chunker |
5 4 + 1 - 0 !
scripts/fastaq_count_sequences |
5 4 + 1 - 0 !
scripts/fastaq_deinterleave |
5 4 + 1 - 0 !
scripts/fastaq_enumerate_names |
5 4 + 1 - 0 !
scripts/fastaq_expand_nucleotides |
5 4 + 1 - 0 !
scripts/fastaq_extend_gaps |
5 4 + 1 - 0 !
scripts/fastaq_fasta_to_fastq |
5 4 + 1 - 0 !
scripts/fastaq_filter |
5 4 + 1 - 0 !
scripts/fastaq_get_ids |
5 4 + 1 - 0 !
scripts/fastaq_get_seq_flanking_gaps |
5 4 + 1 - 0 !
scripts/fastaq_insert_or_delete_bases |
8 5 + 3 - 0 !
scripts/fastaq_interleave |
5 4 + 1 - 0 !
scripts/fastaq_long_read_simulate |
7 4 + 3 - 0 !
scripts/fastaq_make_random_contigs |
5 4 + 1 - 0 !
scripts/fastaq_merge |
5 4 + 1 - 0 !
scripts/fastaq_replace_bases |
5 4 + 1 - 0 !
scripts/fastaq_reverse_complement |
5 4 + 1 - 0 !
scripts/fastaq_scaffolds_to_contigs |
5 4 + 1 - 0 !
scripts/fastaq_search_for_seq |
5 4 + 1 - 0 !
scripts/fastaq_sequence_trim |
5 4 + 1 - 0 !
scripts/fastaq_split_by_base_count |
6 4 + 2 - 0 !
scripts/fastaq_strip_illumina_suffix |
5 4 + 1 - 0 !
scripts/fastaq_to_fake_qual |
5 4 + 1 - 0 !
scripts/fastaq_to_fasta |
5 4 + 1 - 0 !
scripts/fastaq_to_mira_xml |
5 4 + 1 - 0 !
scripts/fastaq_to_orfs_gff |
5 4 + 1 - 0 !
scripts/fastaq_to_perfect_reads |
10 6 + 4 - 0 !
scripts/fastaq_to_quasr_primers_file |
5 4 + 1 - 0 !
scripts/fastaq_to_random_subset |
8 5 + 3 - 0 !
scripts/fastaq_to_tiling_bam |
8 5 + 3 - 0 !
scripts/fastaq_to_unique_by_id |
5 4 + 1 - 0 !
scripts/fastaq_translate |
5 4 + 1 - 0 !
scripts/fastaq_trim_Ns_at_end |
5 4 + 1 - 0 !
scripts/fastaq_trim_ends |
5 4 + 1 - 0 !
35 files changed, 145 insertions(+), 47 deletions(-) |
delay import of fastaq modules by the python executables
Man pages for this package are being automatically created with through the
help2man wrapper called usage_to_man. help2man calls the python executables
with the -h option and converts the usage into a man page.
.
The first step done by all the executables is the import of the modules deployed
by this package. Since the package is not installed in the system at build time,
the man pages would never be properly created.
.
This patch solves this problem by importing the modules in this package after
the argument parsing code.
.
Upstream prefered to keep the code as it is for styling reasons, which is
perfectly reasonable
.
fastaq (1.5.0-1) UNRELEASED; urgency=low
.
* Initial release (Closes: #1234)
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