2plc__hssp-filtered.aln | 38 38 + 0 - 0 !
1 file changed, 38 insertions(+)

 example file

score_conservation.py | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 change interpreter and remove extension from script
 Policy 1.4.2 Interpreter Location: 'The preferred specification for the Python interpreter is /usr/bin/python'.
 Policy 10.4 Scripts: 'the script name should not include an extension'.

score_conservation.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix import of numarray from numpy.numarray

score_conservation.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 correct path to packaged default matrix file

score_conservation.py | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 move code outside of loop

score_conservation.py | 18 13 + 5 - 0 !
1 file changed, 13 insertions(+), 5 deletions(-)

 allow parsing of stockholm format as well

score_conservation.py | 43 22 + 21 - 0 !
1 file changed, 22 insertions(+), 21 deletions(-)

 use python3 style print()

score_conservation.py | 10 5 + 5 - 0 !
1 file changed, 5 insertions(+), 5 deletions(-)

 usage() takes print stream parameter