Package: bowtie2 / 2.3.0-2
Metadata
Package | Version | Patches format |
---|---|---|
bowtie2 | 2.3.0-2 | 3.0 (quilt) |
Patch series
view the series filePatch | File delta | Description |
---|---|---|
indentation.patch | (download) |
diff_sample.h |
3 3 + 0 - 0 ! |
suppress "warning: this if clause does not guard... [-Wmisleading-indentation]" messages |
hardening.patch | (download) |
Makefile |
32 17 + 15 - 0 ! |
patch injects hardening c(pp,xx) flags and ldflags |
reproducible.patch | (download) |
Makefile |
30 15 + 15 - 0 ! |
make build reproducible This patch removes the embedding of build specific values like hostname, time, etc. from the binary. It also ensures a stable sorting order for all wildcard expansions in the Makefile. |
skip_test_requiring_non free_libmath random perl.patch | (download) |
Makefile |
11 5 + 6 - 0 ! |
math::random is in package libmath-random-perl which is unfortunately in non-free thus we can not use it for testing while building this package. Thus the occurences of references and the surrounding code is removed here. |
do not rebuild during test.patch | (download) |
scripts/sim/run.sh |
18 9 + 9 - 0 ! |
do not rebuild with default settings during test The test suite builds the debug versions of the executables with default flags, while is needs to be built with the flags in d/rules. |
single cpu for test.patch | (download) |
Makefile |
2 1 + 1 - 0 ! |
only use single cpu for testing This also frees us of the dependency to the non-packaged libsys-info-perl. |