Man/afetch.man | 22 15 + 7 - 0 !
1 file changed, 15 insertions(+), 7 deletions(-)

 fix manpage for afetch

Man/alistat.man | 20 15 + 5 - 0 !
1 file changed, 15 insertions(+), 5 deletions(-)

 fix manpage for alistat

Man/compstruct.man | 20 15 + 5 - 0 !
1 file changed, 15 insertions(+), 5 deletions(-)

 fix manpage for compstruct

Makefile.in | 67 49 + 18 - 0 !
1 file changed, 49 insertions(+), 18 deletions(-)

 make sure all tools will be really built

Man/seqstat.man | 22 16 + 6 - 0 !
1 file changed, 16 insertions(+), 6 deletions(-)

 fix manpage for seqstat

Man/sfetch.man | 22 16 + 6 - 0 !
1 file changed, 16 insertions(+), 6 deletions(-)

 fix manpage for sfetch

Man/shuffle.man | 28 19 + 9 - 0 !
1 file changed, 19 insertions(+), 9 deletions(-)

 fix manpage for shuffle

Man/sindex.man | 22 17 + 5 - 0 !
1 file changed, 17 insertions(+), 5 deletions(-)

 fix manpage for sindex

Man/sreformat.man | 24 17 + 7 - 0 !
1 file changed, 17 insertions(+), 7 deletions(-)

 fix manpage for sreformat

getopt.c | 3 2 + 1 - 0 !
1 file changed, 2 insertions(+), 1 deletion(-)

 fix segmentation fault with ambiguous arguments
 The command line parser accessed invalid memory when a given
 option matched several option definitions as a prefix, but none
 of them exactly (e.g. "--s" as option with "--sam" and
 "--samfrac" as option definitions). This was due to an incorrect
 check of exact matching that tried to access "opt[i].name" with
 i being greater than the upper bound of the array "opt" in case
 of not having an exact match. Replaced it with the proper check.

Testsuite/Makefile.in | 1 0 + 1 - 0 !
1 file changed, 1 deletion(-)

 make build reproducible
 This patch removes the CFLAGS from the testsuite Makefile.in, which contain
 the build directory.

Testsuite/bug-1-sfetch-paths | 1 1 + 0 - 0 !
Testsuite/x-base-afetch | 1 1 + 0 - 0 !
Testsuite/x-base-alistat | 1 1 + 0 - 0 !
Testsuite/x-base-seqstat | 1 1 + 0 - 0 !
Testsuite/x-base-sfetch | 1 1 + 0 - 0 !
Testsuite/x-base-shuffle | 1 1 + 0 - 0 !
Testsuite/x-base-sindex | 1 1 + 0 - 0 !
Testsuite/x-base-sreformat | 1 1 + 0 - 0 !
8 files changed, 8 insertions(+)

 add local directory to perl lib search path
 '.' was removed from Perl's default @INC by https://bugs.debian.org/588017,
 breaking the testsuite here. This patch reintroduces the current directory
 explicitly.