Package: biojava4-live / 4.2.5+dfsg-1
Metadata
Package | Version | Patches format |
---|---|---|
biojava4-live | 4.2.5+dfsg-1 | 3.0 (quilt) |
Patch series
view the series filePatch | File delta | Description |
---|---|---|
fix_itext_class_updates | (download) |
biojava-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java |
2 1 + 1 - 0 ! |
one of the class from itext moved to an other package. Upstream code needs to refer to this new package and depends on newer release if iText5 |
use_simple_json | (download) |
biojava-ws/src/main/java/org/biojava/nbio/ws/hmmer/RemoteHmmerScan.java |
20 10 + 10 - 0 ! |
json.org library is not "free", use simple_json library and update according to API Last-Updated: 2012-12-02 |
fix_import | (download) |
biojava-structure-gui/src/main/java/demo/DemoAlignmentFromFasta.java |
7 7 + 0 - 0 ! |
some classes are not imported |
faketest | (download) |
biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/ProfeatPropertiesImplTest.java |
7 7 + 0 - 0 ! |
empty test creates failure at compilate, add fake test to allow compilation and global test success |
fix_ascii_characters_mapping | (download) |
biojava-forester/src/main/java/org/forester/test/Test.java |
2 1 + 1 - 0 ! |
unmappable character for encoding ascii |
skip_network_related_tests | (download) |
biojava-core/src/test/java/org/biojava/nbio/core/sequence/io/GenbankCookbookTest.java |
15 0 + 15 - 0 ! |
debian builds expects to run with no network |
remove_openchart_use | (download) |
biojava-forester/src/main/java/org/forester/application/msa_compactor.java |
3 1 + 2 - 0 ! |
biojava makes use of a limited set of forester As openchart is not available in Debian, remove openchart related calls to make forester compilation OK in biojava context |
ignore_fake_tests | (download) |
biojava-aa-prop/src/test/java/org/biojava/nbio/aaproperties/profeat/CookBookTest.java |
5 4 + 1 - 0 ! |
some class tests do not have tests inside, but junit tries to execute them. Simple skip those classes with no real test to avoid errors during build. |