Package: bcftools / 1.3.1-1

Metadata

Package Version Patches format
bcftools 1.3.1-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
external libs.patch | (download)

Makefile | 21 9 + 12 - 0 !
1 file changed, 9 insertions(+), 12 deletions(-)

 use packaged libraries
compiler flags.patch | (download)

Makefile | 6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-)

 allow compiler flags to be passed through to build system
 The development version of the upstream code already supports LDFLAGS,
 so many parts of this patch will not be needed in the next upstream
 release
destdir.patch | (download)

Makefile | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 set installation prefix
tests pluginpath.patch | (download)

test/test.pl | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 set the bcftools plugin path to search system directories
 The tests were intended to be run at build time only, so the test
 script sets the plugins to be searched for /only/ in the build directory.
 It does so by setting the environment variable BCFTOOLS_PLUGINS. However,
 as described in the manpage bcftools(1), adding a colon to either side of
 the path entry in the environment variable also searches the system
 directories. We need this for autopkgtest to work.